Alternatives to FoundationDB

Recently we were looking at a few robust and cost-effective ways of replicating the data that resides in our production MongoDB to a PostgreSQL database for data warehousing and business intelligence.

We set ourselves the following criteria for the optimal tool that would do this job: - The data replication must be near real-time, yet it should NOT impact the production database - The data replication must be horizontally scalable (based on the load), asynchronous & crash-resilient

Based on the above criteria, we selected the following tools to perform the end to end data replication:

We chose MongoDB Stitch for picking up the changes in the source database. It is the serverless platform from MongoDB. One of the services offered by MongoDB Stitch is Stitch Triggers. Using stitch triggers, you can execute a serverless function (in Node.js) in real time in response to changes in the database. When there are a lot of database changes, Stitch automatically "feeds forward" these changes through an asynchronous queue.

We chose Amazon SQS as the pipe / message backbone for communicating the changes from MongoDB to our own replication service. Interestingly enough, MongoDB stitch offers integration with AWS services.

In the Node.js function, we wrote minimal functionality to communicate the database changes (insert / update / delete / replace) to Amazon SQS.

Next we wrote a minimal micro-service in Python to listen to the message events on SQS, pickup the data payload & mirror the DB changes on to the target Data warehouse. We implemented source data to target data translation by modelling target table structures through SQLAlchemy . We deployed this micro-service as AWS Lambda with Zappa. With Zappa, deploying your services as event-driven & horizontally scalable Lambda service is dumb-easy.

In the end, we got to implement a highly scalable near realtime Change Data Replication service that "works" and deployed to production in a matter of few days!

We use MongoDB as our primary #datastore. Mongo's approach to replica sets enables some fantastic patterns for operations like maintenance, backups, and #ETL.

As we pull #microservices from our #monolith, we are taking the opportunity to build them with their own datastores using PostgreSQL. We also use Redis to cache data we’d never store permanently, and to rate-limit our requests to partners’ APIs (like GitHub).

When we’re dealing with large blobs of immutable data (logs, artifacts, and test results), we store them in Amazon S3. We handle any side-effects of S3’s eventual consistency model within our own code. This ensures that we deal with user requests correctly while writes are in process.

1.0 of Stream leveraged Cassandra for storing the feed. Cassandra is a common choice for building feeds. Instagram, for instance started, out with Redis but eventually switched to Cassandra to handle their rapid usage growth. Cassandra can handle write heavy workloads very efficiently.

Cassandra is a great tool that allows you to scale write capacity simply by adding more nodes, though it is also very complex. This complexity made it hard to diagnose performance fluctuations. Even though we had years of experience with running Cassandra, it still felt like a bit of a black box. When building Stream 2.0 we decided to go for a different approach and build Keevo. Keevo is our in-house key-value store built upon RocksDB, gRPC and Raft.

RocksDB is a highly performant embeddable database library developed and maintained by Facebook’s data engineering team. RocksDB started as a fork of Google’s LevelDB that introduced several performance improvements for SSD. Nowadays RocksDB is a project on its own and is under active development. It is written in C++ and it’s fast. Have a look at how this benchmark handles 7 million QPS. In terms of technology it’s much more simple than Cassandra.

This translates into reduced maintenance overhead, improved performance and, most importantly, more consistent performance. It’s interesting to note that LinkedIn also uses RocksDB for their feed.

#InMemoryDatabases #DataStores #Databases

Trying to establish a data lake(or maybe puddle) for my org's Data Sharing project. The idea is that outside partners would send cuts of their PHI data, regardless of format/variables/systems, to our Data Team who would then harmonize the data, create data marts, and eventually use it for something. End-to-end, I'm envisioning:

1. Ingestion->Secure, role-based, self service portal for users to upload data (1a. bonus points if it can preform basic validations/masking)
2. Storage->Amazon S3 seems like the cheapest. We probably won't need very big, even at full capacity. Our current storage is a secure Box folder that has ~4GB with several batches of test data, code, presentations, and planning docs.
3. Data Catalog-> AWS Glue? Azure Data Factory? Snowplow? is the main difference basically based on the vendor? We also will have Data Dictionaries/Codebooks from submitters. Where would they fit in?
4. Partitions-> I've seen Cassandra and YARN mentioned, but have no experience with either
5. Processing-> We want to use SAS if at all possible. What will work with SAS code?
6. Pipeline/Automation->The check-in and verification processes that have been outlined are rather involved. Some sort of automated messaging or approval workflow would be nice
7. I have very little guidance on what a "Data Mart" should look like, so I'm going with the idea that it would be another "experimental" partition. Unless there's an actual mart-building paradigm I've missed?
8. An end user might use the catalog to pull certain de-identified data sets from the marts. Again, role-based access and self-service gui would be preferable. I'm the only full-time tech person on this project, but I'm mostly an OOP, HTML, JavaScript, and some SQL programmer. Most of this is out of my repertoire. I've done a lot of research, but I can't be an effective evangelist without hands-on experience. Since we're starting a new year of our grant, they've finally decided to let me try some stuff out. Any pointers would be appreciated!

StackShare Feed is built entirely with React, Glamorous, and Apollo. One of our objectives with the public launch of the Feed was to enable a Server-side rendered (SSR) experience for our organic search traffic. When you visit the StackShare Feed, and you aren't logged in, you are delivered the Trending feed experience. We use an in-house Node.js rendering microservice to generate this HTML. This microservice needs to run and serve requests independent of our Rails web app. Up until recently, we had a mono-repo with our Rails and React code living happily together and all served from the same web process. In order to deploy our SSR app into a Heroku environment, we needed to split out our front-end application into a separate repo in GitHub. The driving factor in this decision was mostly due to limitations imposed by Heroku specifically with how processes can't communicate with each other. A new SSR app was created in Heroku and linked directly to the frontend repo so it stays in-sync with changes.

Related to this, we need a way to "deploy" our frontend changes to various server environments without building & releasing the entire Ruby application. We built a hybrid Amazon S3 Amazon CloudFront solution to host our Webpack bundles. A new CircleCI script builds the bundles and uploads them to S3. The final step in our rollout is to update some keys in Redis so our Rails app knows which bundles to serve. The result of these efforts were significant. Our frontend team now moves independently of our backend team, our build & release process takes only a few minutes, we are now using an edge CDN to serve JS assets, and we have pre-rendered React pages!

#StackDecisionsLaunch #SSR #Microservices #FrontEndRepoSplit

Our whole DevOps stack consists of the following tools:

• GitHub (incl. GitHub Pages/Markdown for Documentation, GettingStarted and HowTo's) for collaborative review and code management tool
• Respectively Git as revision control system
• SourceTree as Git GUI
• Visual Studio Code as IDE
• CircleCI for continuous integration (automatize development process)
• Prettier / TSLint / ESLint as code linter
• SonarQube as quality gate
• Docker as container management (incl. Docker Compose for multi-container application management)
• VirtualBox for operating system simulation tests
• Kubernetes as cluster management for docker containers
• Heroku for deploying in test environments
• nginx as web server (preferably used as facade server in production environment)
• SSLMate (using OpenSSL) for certificate management
• Amazon EC2 (incl. Amazon S3) for deploying in stage (production-like) and production environments
• PostgreSQL as preferred database system
• Redis as preferred in-memory database/store (great for caching)

The main reason we have chosen Kubernetes over Docker Swarm is related to the following artifacts:

• Key features: Easy and flexible installation, Clear dashboard, Great scaling operations, Monitoring is an integral part, Great load balancing concepts, Monitors the condition and ensures compensation in the event of failure.
• Applications: An application can be deployed using a combination of pods, deployments, and services (or micro-services).
• Functionality: Kubernetes as a complex installation and setup process, but it not as limited as Docker Swarm.
• Monitoring: It supports multiple versions of logging and monitoring when the services are deployed within the cluster (Elasticsearch/Kibana (ELK), Heapster/Grafana, Sysdig cloud integration).
• Scalability: All-in-one framework for distributed systems.
• Other Benefits: Kubernetes is backed by the Cloud Native Computing Foundation (CNCF), huge community among container orchestration tools, it is an open source and modular tool that works with any OS.

We implemented our first large scale EPR application from naologic.com using CouchDB .

Very fast, replication works great, doesn't consume much RAM, queries are blazing fast but we found a problem: the queries were very hard to write, it took a long time to figure out the API, we had to go and write our own @nodejs library to make it work properly.

It lost most of its support. Since then, we migrated to Couchbase and the learning curve was steep but all worth it. Memcached indexing out of the box, full text search works great.

Hey, we want to build a referral campaign mechanism that will probably contain millions of records within the next few years. We want fast read access based on IDs or some indexes, and isolation is crucial as some listeners will try to update the same document at the same time. What's your suggestion between Couchbase and MongoDB? Thanks!

Our whole DevOps stack consists of the following tools:

• GitHub (incl. GitHub Pages/Markdown for Documentation, GettingStarted and HowTo's) for collaborative review and code management tool
• Respectively Git as revision control system
• SourceTree as Git GUI
• Visual Studio Code as IDE
• CircleCI for continuous integration (automatize development process)
• Prettier / TSLint / ESLint as code linter
• SonarQube as quality gate
• Docker as container management (incl. Docker Compose for multi-container application management)
• VirtualBox for operating system simulation tests
• Kubernetes as cluster management for docker containers
• Heroku for deploying in test environments
• nginx as web server (preferably used as facade server in production environment)
• SSLMate (using OpenSSL) for certificate management
• Amazon EC2 (incl. Amazon S3) for deploying in stage (production-like) and production environments
• PostgreSQL as preferred database system
• Redis as preferred in-memory database/store (great for caching)

The main reason we have chosen Kubernetes over Docker Swarm is related to the following artifacts:

• Key features: Easy and flexible installation, Clear dashboard, Great scaling operations, Monitoring is an integral part, Great load balancing concepts, Monitors the condition and ensures compensation in the event of failure.
• Applications: An application can be deployed using a combination of pods, deployments, and services (or micro-services).
• Functionality: Kubernetes as a complex installation and setup process, but it not as limited as Docker Swarm.
• Monitoring: It supports multiple versions of logging and monitoring when the services are deployed within the cluster (Elasticsearch/Kibana (ELK), Heapster/Grafana, Sysdig cloud integration).
• Scalability: All-in-one framework for distributed systems.
• Other Benefits: Kubernetes is backed by the Cloud Native Computing Foundation (CNCF), huge community among container orchestration tools, it is an open source and modular tool that works with any OS.

Recently we were looking at a few robust and cost-effective ways of replicating the data that resides in our production MongoDB to a PostgreSQL database for data warehousing and business intelligence.

We set ourselves the following criteria for the optimal tool that would do this job: - The data replication must be near real-time, yet it should NOT impact the production database - The data replication must be horizontally scalable (based on the load), asynchronous & crash-resilient

Based on the above criteria, we selected the following tools to perform the end to end data replication:

We chose MongoDB Stitch for picking up the changes in the source database. It is the serverless platform from MongoDB. One of the services offered by MongoDB Stitch is Stitch Triggers. Using stitch triggers, you can execute a serverless function (in Node.js) in real time in response to changes in the database. When there are a lot of database changes, Stitch automatically "feeds forward" these changes through an asynchronous queue.

We chose Amazon SQS as the pipe / message backbone for communicating the changes from MongoDB to our own replication service. Interestingly enough, MongoDB stitch offers integration with AWS services.

In the Node.js function, we wrote minimal functionality to communicate the database changes (insert / update / delete / replace) to Amazon SQS.

Next we wrote a minimal micro-service in Python to listen to the message events on SQS, pickup the data payload & mirror the DB changes on to the target Data warehouse. We implemented source data to target data translation by modelling target table structures through SQLAlchemy . We deployed this micro-service as AWS Lambda with Zappa. With Zappa, deploying your services as event-driven & horizontally scalable Lambda service is dumb-easy.

In the end, we got to implement a highly scalable near realtime Change Data Replication service that "works" and deployed to production in a matter of few days!

I am researching different querying solutions to handle ~1 trillion records of data (in the realm of a petabyte). The data is mostly textual. I have identified a few options: Milvus, HBase, RocksDB, and Elasticsearch. I was wondering if there is a good way to compare the performance of these options (or if anyone has already done something like this). I want to be able to compare the speed of ingesting and querying textual data from these tools. Does anyone have information on this or know where I can find some? Thanks in advance!

Hi, I'm building a machine learning pipelines to store image bytes and image vectors in the backend.

So, when users query for the random access image data (key), we return the image bytes and perform machine learning model operations on it.

I'm currently considering going with Amazon S3 (in the future, maybe add Redis caching layer) as the backend system to store the information (s3 buckets with sharded prefixes).

As the latency of S3 is 100-200ms (get/put) and it has a high throughput of 3500 puts/sec and 5500 gets/sec for a given bucker/prefix. In the future I need to reduce the latency, I can add Redis cache.

Also, s3 costs are way fewer than HBase (on Amazon EC2 instances with 3x replication factor)

I have not personally used HBase before, so can someone help me if I'm making the right choice here? I'm not aware of Hbase latencies and I have learned that the MOB feature on Hbase has to be turned on if we have store image bytes on of the column families as the avg image bytes are 240Kb.