Alternatives to MonetDB

1.0 of Stream leveraged Cassandra for storing the feed. Cassandra is a common choice for building feeds. Instagram, for instance started, out with Redis but eventually switched to Cassandra to handle their rapid usage growth. Cassandra can handle write heavy workloads very efficiently.

Cassandra is a great tool that allows you to scale write capacity simply by adding more nodes, though it is also very complex. This complexity made it hard to diagnose performance fluctuations. Even though we had years of experience with running Cassandra, it still felt like a bit of a black box. When building Stream 2.0 we decided to go for a different approach and build Keevo. Keevo is our in-house key-value store built upon RocksDB, gRPC and Raft.

RocksDB is a highly performant embeddable database library developed and maintained by Facebook’s data engineering team. RocksDB started as a fork of Google’s LevelDB that introduced several performance improvements for SSD. Nowadays RocksDB is a project on its own and is under active development. It is written in C++ and it’s fast. Have a look at how this benchmark handles 7 million QPS. In terms of technology it’s much more simple than Cassandra.

This translates into reduced maintenance overhead, improved performance and, most importantly, more consistent performance. It’s interesting to note that LinkedIn also uses RocksDB for their feed.

#InMemoryDatabases #DataStores #Databases

Trying to establish a data lake(or maybe puddle) for my org's Data Sharing project. The idea is that outside partners would send cuts of their PHI data, regardless of format/variables/systems, to our Data Team who would then harmonize the data, create data marts, and eventually use it for something. End-to-end, I'm envisioning:

1. Ingestion->Secure, role-based, self service portal for users to upload data (1a. bonus points if it can preform basic validations/masking)
2. Storage->Amazon S3 seems like the cheapest. We probably won't need very big, even at full capacity. Our current storage is a secure Box folder that has ~4GB with several batches of test data, code, presentations, and planning docs.
3. Data Catalog-> AWS Glue? Azure Data Factory? Snowplow? is the main difference basically based on the vendor? We also will have Data Dictionaries/Codebooks from submitters. Where would they fit in?
4. Partitions-> I've seen Cassandra and YARN mentioned, but have no experience with either
5. Processing-> We want to use SAS if at all possible. What will work with SAS code?
6. Pipeline/Automation->The check-in and verification processes that have been outlined are rather involved. Some sort of automated messaging or approval workflow would be nice
7. I have very little guidance on what a "Data Mart" should look like, so I'm going with the idea that it would be another "experimental" partition. Unless there's an actual mart-building paradigm I've missed?
8. An end user might use the catalog to pull certain de-identified data sets from the marts. Again, role-based access and self-service gui would be preferable. I'm the only full-time tech person on this project, but I'm mostly an OOP, HTML, JavaScript, and some SQL programmer. Most of this is out of my repertoire. I've done a lot of research, but I can't be an effective evangelist without hands-on experience. Since we're starting a new year of our grant, they've finally decided to let me try some stuff out. Any pointers would be appreciated!

When I joined NYT there was already broad dissatisfaction with the LAMP (Linux Apache HTTP Server MySQL PHP) Stack and the front end framework, in particular. So, I wasn't passing judgment on it. I mean, LAMP's fine, you can do good work in LAMP. It's a little dated at this point, but it's not ... I didn't want to rip it out for its own sake, but everyone else was like, "We don't like this, it's really inflexible." And I remember from being outside the company when that was called MIT FIVE when it had launched. And been observing it from the outside, and I was like, you guys took so long to do that and you did it so carefully, and yet you're not happy with your decisions. Why is that? That was more the impetus. If we're going to do this again, how are we going to do it in a way that we're gonna get a better result?

So we're moving quickly away from LAMP, I would say. So, right now, the new front end is React based and using Apollo. And we've been in a long, protracted, gradual rollout of the core experiences.

React is now talking to GraphQL as a primary API. There's a Node.js back end, to the front end, which is mainly for server-side rendering, as well.

Behind there, the main repository for the GraphQL server is a big table repository, that we call Bodega because it's a convenience store. And that reads off of a Kafka pipeline.

We've been using PostgreSQL since the very early days of Zulip, but we actually didn't use it from the beginning. Zulip started out as a MySQL project back in 2012, because we'd heard it was a good choice for a startup with a wide community. However, we found that even though we were using the Django ORM for most of our database access, we spent a lot of time fighting with MySQL. Issues ranged from bad collation defaults, to bad query plans which required a lot of manual query tweaks.

We ended up getting so frustrated that we tried out PostgresQL, and the results were fantastic. We didn't have to do any real customization (just some tuning settings for how big a server we had), and all of our most important queries were faster out of the box. As a result, we were able to delete a bunch of custom queries escaping the ORM that we'd written to make the MySQL query planner happy (because postgres just did the right thing automatically).

And then after that, we've just gotten a ton of value out of postgres. We use its excellent built-in full-text search, which has helped us avoid needing to bring in a tool like Elasticsearch, and we've really enjoyed features like its partial indexes, which saved us a lot of work adding unnecessary extra tables to get good performance for things like our "unread messages" and "starred messages" indexes.

I can't recommend it highly enough.

This is my stack in Application & Data

JavaScript PHP HTML5 jQuery Redis Amazon EC2 Ubuntu Sass Vue.js Firebase Laravel Lumen Amazon RDS GraphQL MariaDB

My Utilities Tools

Google Analytics Postman Elasticsearch

My Devops Tools

Git GitHub GitLab npm Visual Studio Code Kibana Sentry BrowserStack

My Business Tools

Slack

We primarily use MariaDB but use PostgreSQL as a part of GitLab , Sentry and Nextcloud , which (initially) forced us to use it anyways. While this isn't much of a decision – because we didn't have one (ha ha) – we learned to love the perks and advantages of PostgreSQL anyways. PostgreSQL's extension system makes it even more flexible than a lot of the other SQL-based DBs (that only offer stored procedures) and the additional JOIN options, the enhanced role management and the different authentication options came in really handy, when doing manual maintenance on the databases.

Recently we were looking at a few robust and cost-effective ways of replicating the data that resides in our production MongoDB to a PostgreSQL database for data warehousing and business intelligence.

We set ourselves the following criteria for the optimal tool that would do this job: - The data replication must be near real-time, yet it should NOT impact the production database - The data replication must be horizontally scalable (based on the load), asynchronous & crash-resilient

Based on the above criteria, we selected the following tools to perform the end to end data replication:

We chose MongoDB Stitch for picking up the changes in the source database. It is the serverless platform from MongoDB. One of the services offered by MongoDB Stitch is Stitch Triggers. Using stitch triggers, you can execute a serverless function (in Node.js) in real time in response to changes in the database. When there are a lot of database changes, Stitch automatically "feeds forward" these changes through an asynchronous queue.

We chose Amazon SQS as the pipe / message backbone for communicating the changes from MongoDB to our own replication service. Interestingly enough, MongoDB stitch offers integration with AWS services.

In the Node.js function, we wrote minimal functionality to communicate the database changes (insert / update / delete / replace) to Amazon SQS.

Next we wrote a minimal micro-service in Python to listen to the message events on SQS, pickup the data payload & mirror the DB changes on to the target Data warehouse. We implemented source data to target data translation by modelling target table structures through SQLAlchemy . We deployed this micro-service as AWS Lambda with Zappa. With Zappa, deploying your services as event-driven & horizontally scalable Lambda service is dumb-easy.

In the end, we got to implement a highly scalable near realtime Change Data Replication service that "works" and deployed to production in a matter of few days!

We use MongoDB as our primary #datastore. Mongo's approach to replica sets enables some fantastic patterns for operations like maintenance, backups, and #ETL.

As we pull #microservices from our #monolith, we are taking the opportunity to build them with their own datastores using PostgreSQL. We also use Redis to cache data we’d never store permanently, and to rate-limit our requests to partners’ APIs (like GitHub).

When we’re dealing with large blobs of immutable data (logs, artifacts, and test results), we store them in Amazon S3. We handle any side-effects of S3’s eventual consistency model within our own code. This ensures that we deal with user requests correctly while writes are in process.

Our whole DevOps stack consists of the following tools:

• GitHub (incl. GitHub Pages/Markdown for Documentation, GettingStarted and HowTo's) for collaborative review and code management tool
• Respectively Git as revision control system
• SourceTree as Git GUI
• Visual Studio Code as IDE
• CircleCI for continuous integration (automatize development process)
• Prettier / TSLint / ESLint as code linter
• SonarQube as quality gate
• Docker as container management (incl. Docker Compose for multi-container application management)
• VirtualBox for operating system simulation tests
• Kubernetes as cluster management for docker containers
• Heroku for deploying in test environments
• nginx as web server (preferably used as facade server in production environment)
• SSLMate (using OpenSSL) for certificate management
• Amazon EC2 (incl. Amazon S3) for deploying in stage (production-like) and production environments
• PostgreSQL as preferred database system
• Redis as preferred in-memory database/store (great for caching)

The main reason we have chosen Kubernetes over Docker Swarm is related to the following artifacts:

• Key features: Easy and flexible installation, Clear dashboard, Great scaling operations, Monitoring is an integral part, Great load balancing concepts, Monitors the condition and ensures compensation in the event of failure.
• Applications: An application can be deployed using a combination of pods, deployments, and services (or micro-services).
• Functionality: Kubernetes as a complex installation and setup process, but it not as limited as Docker Swarm.
• Monitoring: It supports multiple versions of logging and monitoring when the services are deployed within the cluster (Elasticsearch/Kibana (ELK), Heapster/Grafana, Sysdig cloud integration).
• Scalability: All-in-one framework for distributed systems.
• Other Benefits: Kubernetes is backed by the Cloud Native Computing Foundation (CNCF), huge community among container orchestration tools, it is an open source and modular tool that works with any OS.

Recently we were looking at a few robust and cost-effective ways of replicating the data that resides in our production MongoDB to a PostgreSQL database for data warehousing and business intelligence.

We set ourselves the following criteria for the optimal tool that would do this job: - The data replication must be near real-time, yet it should NOT impact the production database - The data replication must be horizontally scalable (based on the load), asynchronous & crash-resilient

Based on the above criteria, we selected the following tools to perform the end to end data replication:

We chose MongoDB Stitch for picking up the changes in the source database. It is the serverless platform from MongoDB. One of the services offered by MongoDB Stitch is Stitch Triggers. Using stitch triggers, you can execute a serverless function (in Node.js) in real time in response to changes in the database. When there are a lot of database changes, Stitch automatically "feeds forward" these changes through an asynchronous queue.

We chose Amazon SQS as the pipe / message backbone for communicating the changes from MongoDB to our own replication service. Interestingly enough, MongoDB stitch offers integration with AWS services.

In the Node.js function, we wrote minimal functionality to communicate the database changes (insert / update / delete / replace) to Amazon SQS.

Next we wrote a minimal micro-service in Python to listen to the message events on SQS, pickup the data payload & mirror the DB changes on to the target Data warehouse. We implemented source data to target data translation by modelling target table structures through SQLAlchemy . We deployed this micro-service as AWS Lambda with Zappa. With Zappa, deploying your services as event-driven & horizontally scalable Lambda service is dumb-easy.

In the end, we got to implement a highly scalable near realtime Change Data Replication service that "works" and deployed to production in a matter of few days!